Synthesize Bio MCP for AI agents
Agents read Synthesize Bio MCP at once. Changes and sends are held for a person's approval by default.
About Synthesize Bio MCP
Synthesize Bio MCP lets agents start and monitor bulk or single-cell gene-expression analyses from natural-language experiment requests.
What an agent can do in Synthesize Bio MCP
Every Synthesize Bio MCP action is classed by the platform as a read, a change or a send. Reads run at once. Changes and sends are held for a person by default.
Runs at once (reads)
Looks things up in Synthesize Bio MCP without asking first. 4 actions.
- Get analysis resultsPolls the status of a gene expression analysis. Each call waits server-side for a short bounded window and may return earlier if progress is detected. Responses always include a `structuredContent` ob
- Get counts data urlReturns a presigned S3 URL to download the raw gene expression counts data (JSON) produced by a completed or in-progress analysis job. The data is typically large (20,000+ genes by N samples) and requ
- Get metadata schemaReturns the structured-metadata schema used to turn a natural-language experiment description into sample groups. Response fields include `group_schema` (the JSON shape of one sample group), the `fiel
- Resolve sample metadataDeterministically harmonizes already-structured sample `groups` to Synthesize Bio's controlled ontology vocabulary. Does not accept a natural-language prompt and makes no AI calls. Input: `groups` — a
Held for approval by default (changes and sends)
Held for a person's approval by default. The approval is recorded and the action is sent once, never twice, with 10 seconds to undo. 1 action.
- Analyze gene expressionStarts a differential gene expression analysis using Synthesize Bio's AI platform. Requires the resolution_id returned by resolve_sample_metadata; raw natural-language prompts are not accepted. Requir
Changes wait in Needs you
Changes and sends in Synthesize Bio MCP are held for a person's approval by default. The approval is recorded, and the action is sent once, never twice, with 10 seconds to undo.
Synthesize Bio MCP questions
Can an agent change data in Synthesize Bio MCP on its own?
Not by default. Changes and sends in Synthesize Bio MCP are held for a person's approval. The approval is recorded, and the action is sent once, never twice, with 10 seconds to undo.
What can an agent read in Synthesize Bio MCP?
This connector lists 4 read actions. Reads run at once, without waiting for approval.
How does Synthesize Bio MCP connect?
It connects with dcr oauth. Connectors are built and maintained by third-party developers; availability is confirmed during scoping.